Likely one of two scenarios:
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After being shut-in, when the wells were turned back on they don’t produce like before. This is a risk of shutting-in a well, no one cannot predict the well’s performance once the well is turned back on (pressure’s within the reservoir are impacted by a well being shut-in/closed).
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Not all the wells are not actually turned back online. Are you getting paid on the same number of wells as before?